Doming modes and dynamics of model heme compounds.

نویسندگان

  • Dennis D Klug
  • Marek Z Zgierski
  • John S Tse
  • Zhenxian Liu
  • James R Kincaid
  • Kazimierz Czarnecki
  • Russell J Hemley
چکیده

Synchrotron far-IR spectroscopy and density-functional calculations are used to characterize the low-frequency dynamics of model heme FeCO compounds. The "doming" vibrational mode in which the iron atom moves out of the porphyrin plane while the periphery of this ring moves in the opposite direction determines the reactivity of oxygen with this type of molecule in biological systems. Calculations of frequencies and absorption intensities and the measured pressure dependence of vibrational modes in the model compounds are used to identify the doming and related normal modes.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Experimental Observation of Anharmonic Coupling of the Heme-Doming and Iron-Ligand Out-of-Plane Vibrational Modes Confirmed by Density Functional Theory

In the deoxy ferrous state of histidine-ligated heme proteins, the iron-histidine band (νFe-His) has been assigned as a stretching mode that involves a two-body motion involving the iron and histidine combined with a minor amount of heme doming. An analogous Raman band, νFe-L has been observed in the proximal cavity mutant of H93G myoglobin where the Raman band of a series of nonnative axial li...

متن کامل

Observing heme doming in myoglobin with femtosecond X-ray absorption spectroscopya)

We report time-resolved X-ray absorption measurements after photolysis of carbonmonoxy myoglobin performed at the LCLS X-ray free electron laser with nearly 100 fs (FWHM) time resolution. Data at the Fe K-edge reveal that the photoinduced structural changes at the heme occur in two steps, with a faster (∼70 fs) relaxation preceding a slower (∼400 fs) one. We tentatively attribute the first rela...

متن کامل

Evidence for sub-picosecond heme doming in hemoglobin and myoglobin: a time-resolved resonance Raman comparison of carbonmonoxy and deoxy species.

Separation of the photophysical aspects of the sub-picosecond (sub-ps) time-resolved resonance Raman signal from contributions due to conformation has been achieved by comparing deoxyhemoglobin (Hb) in the T state with (carbonmonoxy)hemoglobin (HbCO), deoxy-beta 4 (beta 4 CO) (All R state), and monomers deoxymyoglobin and (carbonmonoxy)myoglobin (MbCO) [beta 4 consists of a tetramer of four bet...

متن کامل

Resonance Raman Studies of Heme Axial Ligation in H93G Myoglobin

The resonant Raman active mode identified in numerous studies as the heme iron-histidine stretch has been systematically investigated in the Raman spectrum of 15 exogenous ligands to the heme iron in the myoglobin proximal cavity mutant H93G. Mutation of the native histidine 93 of myoglobin to glycine (H93G) creates a cavity at the heme iron that can be filled with exogenous ligands. Substitute...

متن کامل

Direct evidence for mode-specific vibrational energy relaxation from quantum time-dependent perturbation theory. I. Five-coordinate ferrous iron porphyrin model.

The time scales and mechanisms of mode-specific vibrational energy relaxation in imidazole ligated ferrous iron porphine were studied using a non-Markovian time-dependent perturbation theory and density functional theory calculation. Seven normal modes, including nu(4), nu(7), and five Fe out-of-plane modes (Fe-oop), were treated as the relaxing system mode coupled to all other modes forming th...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Proceedings of the National Academy of Sciences of the United States of America

دوره 99 20  شماره 

صفحات  -

تاریخ انتشار 2002